PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03116.1.g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 324aa    MW: 34628.1 Da    PI: 7.0743
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03116.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.9e-181562148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    +g+WT+eEd+llvd++++ G ++W++ ++  g++R++k+c++rw +yl
  Zmw_sc03116.1.g00010.1.am.mkhc 15 KGPWTPEEDKLLVDYIQKNGHRSWRRLPSLAGLNRCGKSCRLRWTNYL 62
                                    79********************************************97 PP

2Myb_DNA-binding58.51.5e-1868113148
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                     rgr+T eE++l+++++  lG++ W++Ia +++ gRt++++k++w+++l
  Zmw_sc03116.1.g00010.1.am.mkhc  68 RGRFTDEEEKLIIHLHSILGNK-WSSIATKLP-GRTDNEIKNYWNTHL 113
                                     89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.461062IPR017930Myb domain
SuperFamilySSF466892.2E-3012109IPR009057Homeodomain-like
SMARTSM007171.8E-141464IPR001005SANT/Myb domain
PfamPF002497.2E-171562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-241669IPR009057Homeodomain-like
CDDcd001672.40E-111762No hitNo description
PROSITE profilePS5129428.06363117IPR017930Myb domain
SMARTSM007174.0E-1767115IPR001005SANT/Myb domain
PfamPF002491.3E-1668113IPR001005SANT/Myb domain
CDDcd001671.93E-1370113No hitNo description
Gene3DG3DSA:1.10.10.607.3E-2770117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGRSPCCDQE SGVKKGPWTP EEDKLLVDYI QKNGHRSWRR LPSLAGLNRC GKSCRLRWTN  60
YLRPDIKRGR FTDEEEKLII HLHSILGNKW SSIATKLPGR TDNEIKNYWN THLRKKLLNM  120
GIDPVTHRLR TDLNLLAGLP NFLAGANNNN TSTWDMNALK LQADAAKFQL LQGLISAIAT  180
AAAPSVDLMA LLAASGGGLT QTVSVDRGSS RSSQYDGFMD LPALTTAPTV SPGMTSFVGL  240
LNGFSGGSAH AGDGLSSTDL GQSGASGSSM TATMAPPLVA AVECNAGAGG ATPCEETPAS  300
SPFQGLENLN LDDLSNDCWK DLLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-31151174105MYB PROTO-ONCOGENE PROTEIN
1mse_C8e-31151174105C-Myb DNA-Binding Domain
1msf_C8e-31151174105C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964317.11e-162PREDICTED: transcription factor MYB39-like
TrEMBLK3XXY21e-162K3XXY2_SETIT; Uncharacterized protein
STRINGSi006790m1e-162(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55293158